ライブラリ登録: Guest
Critical Reviews™ in Immunology

年間 6 号発行

ISSN 印刷: 1040-8401

ISSN オンライン: 2162-6472

The Impact Factor measures the average number of citations received in a particular year by papers published in the journal during the two preceding years. 2017 Journal Citation Reports (Clarivate Analytics, 2018) IF: 1.3 To calculate the five year Impact Factor, citations are counted in 2017 to the previous five years and divided by the source items published in the previous five years. 2017 Journal Citation Reports (Clarivate Analytics, 2018) 5-Year IF: 2.6 The Eigenfactor score, developed by Jevin West and Carl Bergstrom at the University of Washington, is a rating of the total importance of a scientific journal. Journals are rated according to the number of incoming citations, with citations from highly ranked journals weighted to make a larger contribution to the eigenfactor than those from poorly ranked journals. Eigenfactor: 0.00079 The Journal Citation Indicator (JCI) is a single measurement of the field-normalized citation impact of journals in the Web of Science Core Collection across disciplines. The key words here are that the metric is normalized and cross-disciplinary. JCI: 0.24 SJR: 0.429 SNIP: 0.287 CiteScore™:: 2.7 H-Index: 81

Indexed in

Identification of Antigen-Specific B-Cell Receptor Sequences from the Total B-Cell Repertoire

巻 35, 発行 6, 2015, pp. 463-478
DOI: 10.1615/CritRevImmunol.2016016462
Get accessGet access

要約

Advances in next-generation sequencing now allow characterization of the global B-cell receptor (BCR) heavy-chain repertoire at a level that reflects its huge diversity. This technology has provided great insight into the structure of the BCR repertoire and how it responds to specific antigen stimuli. There are numerous potential clinical and research applications of BCR repertoire sequencing, but a major hurdle in the realization of these applications is the identification of the antigen-specific sequences of interest from within the total repertoire. To deconvolute the antigen-specific sequences from total repertoire, either a source of antigen-enriched sequence data is required with which to annotate the total repertoire, or de novo annotation methods must be used based on preconceptions of the features of antigen-specific sequences and their behavior following antigen-specific immune stimulation. We present a review of how these different methods can be applied to identify antigen-specific BCR sequences from the total BCR repertoire.

によって引用された
  1. Callan Curtis G., Mora Thierry, Walczak Aleksandra M., Repertoire sequencing and the statistical ensemble approach to adaptive immunity, Current Opinion in Systems Biology, 1, 2017. Crossref

  2. Ghraichy Marie, Galson Jacob D., Kelly Dominic F., Trück Johannes, B-cell receptor repertoire sequencing in patients with primary immunodeficiency: a review, Immunology, 153, 2, 2018. Crossref

  3. Khavrutskii Ilja V., Chaudhury Sidhartha, Stronsky Sabrina M., Lee Donald W., Benko Jacqueline G., Wallqvist Anders, Bavari Sina, Cooper Christopher L., Quantitative Analysis of Repertoire-Scale Immunoglobulin Properties in Vaccine-Induced B-Cell Responses, Frontiers in Immunology, 8, 2017. Crossref

  4. Reshetova Polina, van Schaik Barbera D. C., Klarenbeek Paul L., Doorenspleet Marieke E., Esveldt Rebecca E. E., Tak Paul-Peter, Guikema Jeroen E. J., de Vries Niek, van Kampen Antoine H. C., Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing, Frontiers in Immunology, 8, 2017. Crossref

  5. Rajan Saravanan, Kierny Michael R., Mercer Andrew, Wu Jincheng, Tovchigrechko Andrey, Wu Herren, Dall′Acqua William F., Xiao Xiaodong, Chowdhury Partha S., Recombinant human B cell repertoires enable screening for rare, specific, and natively paired antibodies, Communications Biology, 1, 1, 2018. Crossref

  6. Olson Branden J., Matsen Frederick A., The Bayesian optimist's guide to adaptive immune receptor repertoire analysis, Immunological Reviews, 284, 1, 2018. Crossref

  7. Fowler Anna, Galson Jacob D., Trück Johannes, Kelly Dominic F., Lunter Gerton, Inferring B cell specificity for vaccines using a Bayesian mixture model, BMC Genomics, 21, 1, 2020. Crossref

  8. Ralph Duncan K., Matsen Frederick A., Wallqvist Anders, Using B cell receptor lineage structures to predict affinity, PLOS Computational Biology, 16, 11, 2020. Crossref

  9. Ripoll Daniel R., Chaudhury Sidhartha, Wallqvist Anders, Deane Charlotte M., Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification, PLOS Computational Biology, 17, 3, 2021. Crossref

  10. Trück Johannes, Eugster Anne, Barennes Pierre, Tipton Christopher M, Luning Prak Eline T, Bagnara Davide, Soto Cinque, Sherkow Jacob S, Payne Aimee S, Lefranc Marie-Paule, Farmer Andrew, Bostick Magnolia, Mariotti-Ferrandiz Encarnita, Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling, eLife, 10, 2021. Crossref

  11. Eugster Anne, Bostick Magnolia L., Gupta Nidhi, Mariotti-Ferrandiz Encarnita, Kraus Gloria, Meng Wenzhao, Soto Cinque, Trück Johannes, Stervbo Ulrik, Luning Prak Eline T., AIRR Community Guide to Planning and Performing AIRR-Seq Experiments, in Immunogenetics, 2453, 2022. Crossref

  12. Greiff Victor, Menzel Ulrike, Miho Enkelejda, Weber Cédric, Riedel René, Cook Skylar, Valai Atijeh, Lopes Telma, Radbruch Andreas, Winkler Thomas H., Reddy Sai T., Systems Analysis Reveals High Genetic and Antigen-Driven Predetermination of Antibody Repertoires throughout B Cell Development, Cell Reports, 19, 7, 2017. Crossref

近刊の記事

Identification of a novel five-gene prognostic model for laryngeal cancer associated with mitophagy using integrated bioinformatics analysis and experimental verification Dong Song, Lun Dong, Mei Wang, Xiaoping Gao Function of steroid receptor coactivators (SRCs) in T cells and cancers: Implications for cancer immunotherapy Wencan Zhang, Xu Cao, Hongmin Wu, Xiancai Zhong, Yun Shi, Zuoming Sun Electroacupuncture Alleviates Ischemic Stroke by Activating the mTOR/SREBP1 Pathway Jiawang Lang, Jianchang Luo, Luodan Wang, Wenbin Xu, Jie Jia, Zhipeng Zhao, Boxu Lang KIAA1429 induces the m6A modification of LINC01106 to enhance the malignancy of lung adenocarcinoma cell via JAK/STAT3 pathway Di Xu, Ziming Wang, Fajiu Li Effect of p-estrogen receptor at serine on its function and breast growth Yuan Liang, Junhui Qin, Tiancheng Ma, Tong Yang, Zhenyu Ke, Ruian Wang Mechanistic Insights into Tanshinone IIA in the Amelioration of Post-Thyroidectomy Hypoparathyroidism Xiaoyu Qian, Lin Li, Liang Chen, Chao Shen, Jian Tang MiRNA let-7d-5p alleviates inflammatory responses by targeting Map3k1 and inactivating ERK/p38 MAPK signaling in microglia Fan Fang, Cheng Chen Role of Natural Killer Cells as Cell-Based Immunotherapy in Oral Tumor Eradication and Differentiation Both In Vivo and In Vitro Kawaljit Kaur, Anahid Jewett The Current and Future States of Natural Killer Cell-Based Immunotherapy in Hepatocellular Carcinoma Tu Nguyen, Po-Chun Chen, Janet Pham, Kawaljit Kaur, Steven Raman, Anahid Jewett, Jason Chiang Phillygenin alleviated arthritis through the inhibition of NLRP3 inflammasome and Ferroptosis by AMPK Jianghui Wang, Shufang Ni, Kai Zheng, Yan Zhao, peihong zhang, Hong Chang The value of systemic immune-inflammation index and T cell subsets in the severity and prognosis of sepsis Hao Zhou Efficacy and Nuances of Precision Molecular Engineering for Hodgkin's Disease to a Gene Therapeutic Approach Muhammad Imran Qadir, Bilal Ahmed, Nadir Hussain Serum interleukin 6 and ferritin levels are the independent risk factors for pneumonia in elderly patients Hao Yuan, Jing Tian, Lu Wen Exploration of diagnostic markers associated with inflammation in chronic kidney disease (CKD) based on WGCNA and machine learning Qianjia Wu, Yang Yang, Chongze Lin Clinical significance of serum CTRP3 level in the prediction of cardiac dysfunction and intestinal mucosal barrier dysfunction in patients with severe acute pancreatitis Qiang Shao, Lin Sun The protective effect and mechanism of mild hypothermia on pig lung injury after cardiopulmonary resuscitation Jinlin Ren, Fangfang Zhu, Dongdong Sang, Mulin Cong, Shujuan Jiang Exploring mechanism of Zilongjin in treating lung adenocarcinoma based on network pharmacology combined with experimental verification Kang Zhang, Xiaoqun Chen Gastric Cancer Immune Subtypes and Prognostic Modeling: Insights from Aging-Related Genes Analysis Jian Shen, Minzhe Li Effects of different doses of dexmedetomidine on the prevention of postoperative sleep disturbance and serum neurotransmitter level in patients under general anesthesia Huifei Lu, Fei He, Ying Huang, Zhongliang Wei Identification of key ubiquitination-related genes and their associated with immune infiltration in osteoarthritis based on mRNA-miRNA network Dalu Yuan, Hailiang Shen, Lina Bai, Menglin Li, Qiujie Ye Diagnostic and Prognostic value of peripheral neutrophil CD64 index in elderly patients with community-acquired pneumonia Yan Li, Jing Zhang, Suhang Wang, Jie Cao Identification of Metabolism-Related Prognostic Biomarkers and Immune Features of Head and Neck Squamous Cell Carcinoma Rongjin Zhou, Junguo Wang Downregulation of miR-503-5p promotes the development of pancreatic cancer via targeting cyclin E2 Fei Li, Ying-pei Ling, Pan Wang, Shi-cheng Gu, Hao Jiang, Jie Zhu
Begell Digital Portal Begellデジタルライブラリー 電子書籍 ジャーナル 参考文献と会報 リサーチ集 価格及び購読のポリシー Begell House 連絡先 Language English 中文 Русский Português German French Spain